rs6234880 SNP Detail

Summary

• ID
  rs6234880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95160557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCTGGGG AGGGTAGCCA
  CCCCTGACTG AAGAGTGCCT GAAACCGCGG GACCATTCTG GTCCATATAA CAGTATTTTA
  AAACTAACTT CCCTCTGTGG GACAGTAGTA ACATGCCTTT TCTTGCCTTT ATGCTTTCCT
  AAGTTAATAT AGGTCCTCTC AACACGAGGT GTCACAGTAA ACACAAGCAA GAGGCACTTA
  Y
  GATCGTTTCT GAGTCATATA GAAATTATCT GAGGTGCATG AACGTTACCC GGAAGTCCAT
  GATTCCAATA AATTGGGAGA ATATGCCACT TAGCGCCTCA GAAGGTCTCT GGGATTTACA
  CTGGCAGGAG CAGGCTATAC CTGAGCGTCA GCGCCTGGAT GTCCAGAGCA TTCAACATCC
  ACATTTGAAG CTAACGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8640612	WI_WGS_13_92362680	WI	MOUSE	f	SNP							T		C
ss49123091	NES12476730	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6234880					SNP	T	T	T	T	T	T	T	C	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49123091	NES12476730	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95160557 () rs orientation: forward

Symbol	Name	Function Class
Gm48420	predicted gene, 48420	252 bp upstream
Pde8b	phosphodiesterase 8B	405 bp downstream
Wdr41	WD repeat domain 41	736 bp downstream