rs6234918 SNP Detail

Summary

• ID
  rs6234918
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79951125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGACGTC AATCGCCCGC
  AACCTCTGAG CCATCTCACC AGCCCAGCTG CTCTTATTTT GCACAGGAAA CGCTCCTCTC
  TATGCCATGG ATCTCAGAGG CGCTACATTA AGGCTTCAGG TTCGGGAGTG TCGACTTTGG
  GCTACTTTTT GACCTTTGAC CCCTCCCCCA AGGCCGTTAA GAGCAAGCCT GGGCTGGATC
  W
  CTTTAGGGAT CCACGAGCCT CTCTCTCCAC CCTCCCCCAT GCCTCCAGTC GCGGCCGTTC
  CCCGGAGGAC GTTGACGCGC GTGAACTCTA ACCGGAGGCC CGAAACTCCG AGGTCACCAC
  AGCCAGCCCA GAGGTTTCGC TGGCCCGTCG CGCTTGCTGA CGGGCGTCTG CGACAGCCAC
  TGGCAAATAA AGTCCCGCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8640650	WI_WGS_10_80575382	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6234918					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79951125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1843	CpG island 1843	within coordinates
Gm67739	predicted gene, 67739	11 bp upstream
Rr384985	regulatory region 384985	within coordinates
Stk11	serine/threonine kinase 11	512 bp upstream
Tssr94480	transcription start site region 94480	488 bp upstream
Tssr94481	transcription start site region 94481	572 bp upstream
Tssr94482	transcription start site region 94482	942 bp upstream
Tssr94483	transcription start site region 94483	976 bp upstream
Tssr94484	transcription start site region 94484	1088 bp upstream
Tssr98400	transcription start site region 98400	1824 bp downstream