rs6235071 SNP Detail

Summary

• ID
  rs6235071
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:72799866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACC TGCGCTTGTT TAAATGAGAC
  K
  TCTGTCTTCT TGCAGGGCCA ATCAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss8640803	WI_WGS_5_71752375	WI	MOUSE	f	SNP									T								G
ss16376127	05.071.727	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	T	T	T	T	T	G	T	T	T	T	G	G	G	T	G	G	G	T	T	G	G	T	T	T	T	G	G	G	G	G	T	T	G	T	G	T	T	G	T	T	T	G	T
ss45736846	mCV24277108	ABI	CRAMUS_MOUSE	f	SNP	T	T	T						T										G
ss148626634	ENSMUSSNP3138781	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T																G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs6235071					SNP	T	T	T	T	T	T	T	G	T	T	T	T	G	G	G	T	G	G	G	T	T	G	G	T	T	T	T	G	G	G	G	G	T	T	G	T	G	T	T	G	T	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:72799866 () rs orientation: forward

Symbol	Name	Function Class
4933408A14Rik	RIKEN cDNA 4933408A14 gene	1884 bp upstream
4933408M05Rik	RIKEN cDNA 4933408M05 gene	within coordinates
Cnga1	cyclic nucleotide gated channel alpha 1	within coordinates
Tssr46616	transcription start site region 46616	1886 bp upstream
Tssr51320	transcription start site region 51320	202 bp downstream
Tssr51321	transcription start site region 51321	235 bp downstream