rs6235083 SNP Detail

Summary

• ID
  rs6235083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:72799876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGGACAAA AACACATGTC AGCATAAATT AAAAAAAAAA
  TACAACTGAA ATTACCACTG GATTCTTACC TGCGCTTGTT TAAATGAGAC TTCTGTCTTC
  Y
  TGCAGGGCCA ATCAGTGGTA CATCCAAAAC AGACGCAGAT ATATGGTTAA TGTTGGCATT
  GTCAAAATCC AGATGCAAGT TTTCCTTAGT AATAACTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8640815	WI_WGS_5_71752385	WI	MOUSE	f	SNP				T	C
ss45776138	mCV24277109	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T		C
ss148626639	ENSMUSSNP3174725	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6235083					SNP	T	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:72799876 () rs orientation: forward

Symbol	Name	Function Class
4933408A14Rik	RIKEN cDNA 4933408A14 gene	1874 bp upstream
4933408M05Rik	RIKEN cDNA 4933408M05 gene	within coordinates
Cnga1	cyclic nucleotide gated channel alpha 1	within coordinates
Tssr46616	transcription start site region 46616	1876 bp upstream
Tssr51320	transcription start site region 51320	192 bp downstream
Tssr51321	transcription start site region 51321	225 bp downstream