rs6235267 SNP Detail

Summary

• ID
  rs6235267
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57874724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGCCTAA GGAGACTAGA
  CTTTGGCTTA TCGGGGCTGA GATTGGGCAG TTCTCAGTCG GCCCCACGAA GCGAAGCCTG
  GCTTCGGTGA GCGCCGCGGC TGGCTAGTCC TTCCTCCCGC CTCCCTTCCC TGGGCCCTCC
  TCCCTGGTTC TCTGCAACTG TGTAGTTTCG GATACCGCCG CCGCCGCTGC AGCGTCGGAG
  W
  CAAGTCTGAC TCCGGAGCCC GCGGGCTTTC CGCAACAACC ACCAGTTTAT GCAAACTTGC
  GGGTTTCCGG CTAGTGGGTA GCGAGAGTAG GAGCTTCCCC GGAGCGATTC GGTGTCTCGG
  AACAGCCACA GCCAGAGAGG CGGCGGGAGC GCGCGCACCA GACTCTGCTA GACGCGAAAG
  CGGACGAGAC AACTGCGGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8640999	WI_WGS_5_56792982	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6235267					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57874724 () rs orientation: forward

Symbol	Name	Function Class
4932441J04Rik	RIKEN cDNA 4932441J04 gene	within coordinates
Cpgi15874	CpG island 15874	997 bp distal
Cpgi15875	CpG island 15875	within coordinates
Gm73136	predicted gene, 73136	739 bp downstream
Pcdh7	protocadherin 7	585 bp upstream
Rr611759	regulatory region 611759	714 bp distal
Rr611760	regulatory region 611760	235 bp proximal
Rr611761	regulatory region 611761	726 bp proximal
Tssr1483	transcription start site region 1483	756 bp upstream
Tssr46283	transcription start site region 46283	1209 bp downstream
Tssr46284	transcription start site region 46284	443 bp downstream
Tssr46285	transcription start site region 46285	145 bp downstream
Tssr46286	transcription start site region 46286	26 bp downstream
Tssr46287	transcription start site region 46287	98 bp upstream
Tssr46288	transcription start site region 46288	151 bp upstream
Tssr46289	transcription start site region 46289	279 bp upstream
Tssr46290	transcription start site region 46290	363 bp upstream
Tssr46291	transcription start site region 46291	653 bp upstream
Tssr46292	transcription start site region 46292	882 bp upstream
Tssr46293	transcription start site region 46293	1679 bp upstream
Tssr51039	transcription start site region 51039	1576 bp downstream