rs6235340 SNP Detail

Summary

• ID
  rs6235340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16058706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT CAGCAACAGT TACCAGACCT
  Y
  CCTAGCAAAA GTTTCCAGCC TGAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss8641072	WI_WGS_3_15738889	WI	MOUSE	f	SNP		C	T
ss45474000	mCV22654061	ABI	CRAMUS_MOUSE	f	SNP	C		T
ss134641258	ENSMUSSNP658527	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss320670309	CHEV_3_15904542	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs6235340					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16058706 () rs orientation: forward

Symbol	Name	Function Class
Gm5150	predicted gene 5150	within coordinates
Rr374567	regulatory region 374567	within coordinates
Tssr32658	transcription start site region 32658	1786 bp downstream
Tssr32659	transcription start site region 32659	1802 bp downstream
Tssr32660	transcription start site region 32660	1839 bp downstream