rs6235637 SNP Detail

Summary

• ID
  rs6235637
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:160606964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTTGGG GCCAGACTCA
  CCCTGGACTT TAGCTGAGGA CAGGGACTAA ACAGTCACTT GTCTTTCAAC TTATTCCTTA
  CCTCGACCAT ATCAGATCTG CTGAGTGAGT GTGAGGTTAC CCCACCAACT TAGTGACCAA
  AACAAGCCCA GACCTGCCTT ACATTTTAGT TAAGTGCATC TTTCCCTTAG AGGCTTTCCC
  Y
  ACCTAGGATA TAAATCCCCA GAGGATTTAT ATCCATGGGT CACTGTGTCT TATCAGGAAG
  ACTCTACAGC TCCCTGCAGG CTGATCCTGC CGTCTCCACC AGTGTGTTCT GAACCTGCCC
  ACCAAGGACT CAAGAGATAG TTCCATGGTA TTGCCCTAGT TTAGTTAGTT CTATGACCTG
  GCTGTTAGAT TCAACACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
ss8641369	WI_WGS_2_161654240	WI	MOUSE	f	SNP			C	T
ss148150709	ENSMUSSNP5093865	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
rs6235637					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160606964 () rs orientation: forward

Symbol	Name	Function Class
Plcg1	phospholipase C, gamma 1	Intron
Rr569070	regulatory region 569070	1237 bp proximal