rs6236648 SNP Detail

Summary

• ID
  rs6236648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:72800104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTTAAATGAG
  ACNTCTGTCT TCNTGCAGGG CCAATCAGTG GTACATCCAA AACAGACGCA GATATATGGT
  TAATGTTGGC ATTGTCAAAA TCCAGATGCA AGTTTTCCTT AGTAATAACT ATGATGTGGT
  TTCTCCTCTC CTTAAGCAGC ACAAATGGCT CGTTTTTATT AATTATTCCT CAGAAAAGAC
  AGGTCCATGG CATTGGCAGG GGAGGATGTT CGTGGCTCAG TACTGGATTT GGGGATTTGT
  R
  TGTAGATGAG AATAACAGCC GCCAGGTCAT CATTATCCTT AGCTTGAACC TGAGCTCATT
  AATATGTATG CAAGTGATAA ACATAAAGGC CTTTCTCAAA GCCGGTCGCC TAACCTGTCT
  GAAAGTAAGC CAAAAGGAAT ACTGCCTAGT GGGTTTTCTT AAAATTGTTT TGCCAATTTT
  CCTCAGGGTT ATAATACTAT AAGTTTATCA TTAGGATTAA AATGAGACAC TGCAATGTGG
  CTATCTGTGG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8642381	WI_WGS_5_71752613	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6236648					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:72800104 () rs orientation: forward

Symbol	Name	Function Class
4933408A14Rik	RIKEN cDNA 4933408A14 gene	1646 bp upstream
4933408M05Rik	RIKEN cDNA 4933408M05 gene	within coordinates
Cnga1	cyclic nucleotide gated channel alpha 1	9 bp upstream
Tssr46616	transcription start site region 46616	1648 bp upstream
Tssr51320	transcription start site region 51320	12 bp upstream
Tssr51321	transcription start site region 51321	within coordinates