rs6236687 SNP Detail

Summary

• ID
  rs6236687
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97468341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTACAG GTACTGGATC
  ACAGTTAACA CTTCCAGAGC AACAAAATTA GAATTCAGGA AAGACTAGCC CAGAAATTCC
  AGAGCAGAGA ATATGACCAA AGATAGCCTT GTTTCCTGAA AACTAACAGT CAATCTGGGA
  GCAAGAATCT AACTGGTTGC TGAAAACTGG ACCCAATGCT GGGCTGGTTG CTAGGGAACC
  M
  GTGGTGCTGA GGAGGAGGAT GCAGGCTGTG AATGGCGGGC CTTACTTCTG GGAAAGTAGT
  ATCTGCAGAG ATGGTTAAGG GAAACATATC TCATCACTTT AACTCAACTT TACCCAAGCG
  CCTGGTGCTT GGATGATCAC TGCAAAACAC TTCATGCCTT CTCTTCAGAT CAGAAACTCT
  TCTACTAATG TCAGAACTCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8642420	WI_WGS_3_97883994	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6236687					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97468341 () rs orientation: forward

Symbol	Name	Function Class
Chd1l	chromodomain helicase DNA binding protein 1-like	Coding-NonSynonymous
Gm40102	predicted gene, 40102	within coordinates