rs6238694 SNP Detail

Summary

• ID
  rs6238694
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3307567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGATTCA GGACAACCAG
  CTTTGCTAAA GAGCTAGCCT CTTTTTCTTC TGTTAGTTGA AGTATTACAC TCCTCTGAAA
  AAGGAATGTA TACCACTAAT TACTTGATAT CTCCTCATAA CCACGAAAAT ATTTACTTCT
  TGTTATGAGA AAGAAGTACA TTTAAATATT TCTATAAAAA TTTAATTTTT ATTGACTAAA
  W
  TTTTTTCTTT TGCACTTAAA ATATCTTTAA ACAGTATTTC CCAAATTGGC CAGAGTGTTA
  AAATTTAAAT TCAGGTTCAA GAAATATTCT GAAATTATAT AGGAATTGAC TAATGTTGTT
  GGCAGGTCAC ATTAATCGTA CCACTTTGAT TTTAATATTT ATAAAATTCT GAATGTTAGT
  TTCAGATTTT AAAGATGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8644434	WI_WGS_15_3103713	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6238694					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3307567 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	1985 bp downstream
Rr498565	regulatory region 498565	474 bp distal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	1172 bp upstream
Tssr130395	transcription start site region 130395	890 bp downstream
Tssr130396	transcription start site region 130396	853 bp downstream
Tssr130397	transcription start site region 130397	1036 bp upstream
Tssr130398	transcription start site region 130398	1072 bp upstream
Tssr130399	transcription start site region 130399	1180 bp upstream
Tssr130400	transcription start site region 130400	1200 bp upstream
Tssr130401	transcription start site region 130401	1214 bp upstream
Tssr130402	transcription start site region 130402	1282 bp upstream
Tssr130403	transcription start site region 130403	1314 bp upstream
Tssr130404	transcription start site region 130404	1354 bp upstream
Tssr130405	transcription start site region 130405	1374 bp upstream
Tssr130406	transcription start site region 130406	1405 bp upstream
Tssr130407	transcription start site region 130407	1439 bp upstream
Tssr130408	transcription start site region 130408	1475 bp upstream
Tssr130409	transcription start site region 130409	1484 bp upstream
Tssr130410	transcription start site region 130410	1505 bp upstream
Tssr130411	transcription start site region 130411	1561 bp upstream
Tssr130412	transcription start site region 130412	1636 bp upstream
Tssr130413	transcription start site region 130413	1889 bp upstream
Tssr130414	transcription start site region 130414	1937 bp upstream
Tssr133563	transcription start site region 133563	1104 bp downstream
Tssr133564	transcription start site region 133564	1176 bp downstream
Tssr133565	transcription start site region 133565	1224 bp downstream
Tssr133566	transcription start site region 133566	1230 bp downstream
Tssr133567	transcription start site region 133567	1477 bp downstream
Tssr133568	transcription start site region 133568	1548 bp downstream