rs6238743 SNP Detail

Summary

• ID
  rs6238743
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75580771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCCTCCT GTTTCAGAGA
  GCTGGCACCT TCTCTCCTGG AATTCTTTGA GGAACATGAA GAACCAATAC AATGAAGGAG
  CACGCTCCAT CTTCTCAGAA TGCAATGGAA CTAATAGCAA TATAAAGCCA GGCAGGCACA
  CATACACTGA GAAACAGGTG GCTTCCTTCC AGGGGTTTCC ATAAGCATTT GCTGCGGCCC
  W
  GAAGCACCCC AAGAAAAAGT GAGTCTCATG ACTACACGTT CCTGACTCAT TCATCTTGTG
  AGAATCAGGA AGCAGCCAGT CCCCAATGGA TAAACCAGTC AGCTCCTGTA TTCAGGAGGT
  GAGAAAAATC CAAGCACTCA GTTCAGTGAC ATCCACACAC TCTATTCAAG CAAGCATCAA
  GGGGAACAAG GGAGGCACCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8644483	WI_WGS_10_76177701	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6238743					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75580771 () rs orientation: forward

Symbol	Name	Function Class
Cabin1	calcineurin binding protein 1	within coordinates
D10Jhu70	DNA segment, Chr 10, Johns Hopkins University 70	1431 bp distal
Rr216328	regulatory region 216328	371 bp distal
Rr220328	regulatory region 220328	971 bp distal
Rr220329	regulatory region 220329	within coordinates