rs6239027 SNP Detail

Summary

• ID
  rs6239027
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:52293563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGAATC GTTTCTGTCA
  TGGCCGTGAG GGGGAGATAG GCAACAAATC TCAAGCTGCA GATCCTCCCC TCAGTCTGAG
  GAACAGCCCA ATCATTCCAT AGGAGAAAGG CTAGAGGCGT TGGCGCGTCG CCCTCCTCAT
  CCCCAGGGGG CGCCAGCGGC CCGGAGCCAG CCTCATTCTC AAGCGCACGC TCTCTTTAGC
  V
  GTGCGGTGGC GGCTCCAGCC ACGACTCCCG GTCGCGTCGG AGTTCCCCGG CAGCCAATCA
  GAACTCTCCA TGTACTAACG GGGGCGGGGC TGCGGAGGGC GGAGGAAGAT GGCGGCGGGG
  GCTAGGTGAG GTGTTGGCAG TGGCGAGGGG CTCGGGCGCG GGGGGTGGGG GGACGCGGAG
  CGATGGCCCG CGCCGGCCGC                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8644770	WI_WGS_10_52577652	WI	MOUSE	f	SNP	A	C
ss323303511	CHEV_10_52137273	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6239027					SNP	A	C	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:52293563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1536	CpG island 1536	within coordinates
Nus1	NUS1 dehydrodolichyl diphosphate synthase subunit	80 bp upstream
Rr224795	regulatory region 224795	within coordinates
Rr401887	regulatory region 401887	within coordinates
Tssr93302	transcription start site region 93302	65 bp upstream
Tssr93303	transcription start site region 93303	122 bp upstream
Tssr93304	transcription start site region 93304	234 bp upstream
Tssr93305	transcription start site region 93305	404 bp upstream
Tssr93306	transcription start site region 93306	564 bp upstream