rs6239035 SNP Detail

Summary

• ID
  rs6239035
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:52293568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCGTTTC TGTCATGGCC
  GTGAGGGGGA GATAGGCAAC AAATCTCAAG CTGCAGATCC TCCCCTCAGT CTGAGGAACA
  GCCCAATCAT TCCATAGGAG AAAGGCTAGA GGCGTTGGCG CGTCGCCCTC CTCATCCCCA
  GGGGGCGCCA GCGGCCCGGA GCCAGCCTCA TTCTCAAGCG CACGCTCTCT TTAGCAGTGC
  S
  GTGGCGGCTC CAGCCACGAC TCCCGGTCGC GTCGGAGTTC CCCGGCAGCC AATCAGAACT
  CTCCATGTAC TAACGGGGGC GGGGCTGCGG AGGGCGGAGG AAGATGGCGG CGGGGGCTAG
  GTGAGGTGTT GGCAGTGGCG AGGGGCTCGG GCGCGGGGGG TGGGGGGACG CGGAGCGATG
  GCCCGCGCCG GCCGCTGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8644778	WI_WGS_10_52577657	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6239035					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:52293568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1536	CpG island 1536	within coordinates
Nus1	NUS1 dehydrodolichyl diphosphate synthase subunit	75 bp upstream
Rr224795	regulatory region 224795	within coordinates
Rr401887	regulatory region 401887	within coordinates
Tssr93302	transcription start site region 93302	60 bp upstream
Tssr93303	transcription start site region 93303	117 bp upstream
Tssr93304	transcription start site region 93304	229 bp upstream
Tssr93305	transcription start site region 93305	399 bp upstream
Tssr93306	transcription start site region 93306	559 bp upstream