rs6239256 SNP Detail

Summary

• ID
  rs6239256
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3307682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAACCACG AAAATATTTA
  CTTCTTGTTA TGAGAAAGAA GTACATTTAA ATATTTCTAT AAAAATTTAA TTTTTATTGA
  CTAAAATTTT TTCTTTTGCA CTTAAAATAT CTTTAAACAG TATTTCCCAA ATTGGCCAGA
  GTGTTAAAAT TTAAATTCAG GTTCAAGAAA TATTCTGAAA TTATATAGGA ATTGACTAAT
  K
  TTGTTGGCAG GTCACATTAA TCGTACCACT TTGATTTTAA TATTTATAAA ATTCTGAATG
  TTAGTTTCAG ATTTTAAAGA TGAGGATACT GGGTTGCAAA TAAAGCTCTT AAACTTGAAC
  CAACACTAAA TAATTAGTGC TATCAAGATT TAATTTTTTA TATTTTGGGG TTACTTCTGG
  TTTTGCATTT GTGGAAATGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8645000	WI_WGS_15_3103828	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6239256					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3307682 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	1870 bp downstream
Rr498565	regulatory region 498565	589 bp distal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	1057 bp upstream
Tssr130395	transcription start site region 130395	1005 bp downstream
Tssr130396	transcription start site region 130396	968 bp downstream
Tssr130397	transcription start site region 130397	921 bp upstream
Tssr130398	transcription start site region 130398	957 bp upstream
Tssr130399	transcription start site region 130399	1065 bp upstream
Tssr130400	transcription start site region 130400	1085 bp upstream
Tssr130401	transcription start site region 130401	1099 bp upstream
Tssr130402	transcription start site region 130402	1167 bp upstream
Tssr130403	transcription start site region 130403	1199 bp upstream
Tssr130404	transcription start site region 130404	1239 bp upstream
Tssr130405	transcription start site region 130405	1259 bp upstream
Tssr130406	transcription start site region 130406	1290 bp upstream
Tssr130407	transcription start site region 130407	1324 bp upstream
Tssr130408	transcription start site region 130408	1360 bp upstream
Tssr130409	transcription start site region 130409	1369 bp upstream
Tssr130410	transcription start site region 130410	1390 bp upstream
Tssr130411	transcription start site region 130411	1446 bp upstream
Tssr130412	transcription start site region 130412	1521 bp upstream
Tssr130413	transcription start site region 130413	1774 bp upstream
Tssr130414	transcription start site region 130414	1822 bp upstream
Tssr130415	transcription start site region 130415	1896 bp upstream
Tssr133563	transcription start site region 133563	989 bp downstream
Tssr133564	transcription start site region 133564	1061 bp downstream
Tssr133565	transcription start site region 133565	1109 bp downstream
Tssr133566	transcription start site region 133566	1115 bp downstream
Tssr133567	transcription start site region 133567	1362 bp downstream
Tssr133568	transcription start site region 133568	1433 bp downstream