rs6239314 SNP Detail

Summary

• ID
  rs6239314
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:40593776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGAATC TGTAAGCTGC
  TCAAATAGAT TAGTCAAGCG CAAGGAGAGA GCTATGGAAA CCTCATTTTG CAGGCAGTGG
  ACAAGTAAAA ACAAGCTGGG TCTCCTGACT GCCATCTTAA AGCGCAGGGC AGTAAAGAGG
  AGCAGTCTTG GGGAGTGATC CTCAACATGT AGGGTTTGAG CTTCAAAATT TCTGGATTAG
  R
  GTTCACTGGC TTTCATAGAC TCTGCTGATG TTCACTGGAT TAGGTTGATG CTGTTGATGT
  CCACTGCTTG CTTGCTTCTG GGAAGAAGTC TCCATACCTT TTGAGGTCAC AGGCATTTCT
  TTGGTGATTT TTTTCCTAGA CACAGAGTGA TATTATGTGC ATCATTTAGG CACTGTAACC
  TACTGTTGAT AGTCCTACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8645058	WI_WGS_3_40427485	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6239314					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40593776 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13108	CpG island 13108	973 bp proximal
Intu	inturned planar cell polarity protein	Intron
Rr397649	regulatory region 397649	983 bp upstream
Rr575837	regulatory region 575837	740 bp proximal
Rr575838	regulatory region 575838	1676 bp proximal
Tssr28955	transcription start site region 28955	1124 bp upstream