rs6239378 SNP Detail

Summary

• ID
  rs6239378
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75580930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTCCTTC CAGGGGTTTC
  CATAAGCATT TGCTGCGGCC CTGAAGCACC CCAAGAAAAA GTGAGTCTCA TGACTACACG
  TTCCTGACTC ATTCATCTTG TGAGAATCAG GAAGCAGCCA GTCCCCAATG GATAAACCAG
  TCAGCTCCTG TATTCAGGAG GTGAGAAAAA TCCAAGCACT CAGTTCAGTG ACATCCACAC
  W
  CTCTATTCAA GCAAGCATCA AGGGGAACAA GGGAGGCACC GGTGGGGAGG GTGGGAATAG
  GCTGAAAAGC GCTGCTGAGA GAAAGAAGAG CAGTTTGCAG TTACATCAGA GAAACCACAA
  AGTGTCCAGT ACCTGGACGG CAGGAACTTT ACTAGCAGTC CCTGGAAATC CACTTTCTCT
  TCTTTTTTGC ACTTGGTGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8645122	WI_WGS_10_76177860	WI	MOUSE	f	SNP							A		T
ss47905417	NES11937544	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		T		A	A	A	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6239378					SNP	A	A	A	A	A	A	A	T	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47905417	NES11937544	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75580930 () rs orientation: forward

Symbol	Name	Function Class
Cabin1	calcineurin binding protein 1	within coordinates
D10Jhu70	DNA segment, Chr 10, Johns Hopkins University 70	1590 bp distal
Rr216328	regulatory region 216328	530 bp distal
Rr220328	regulatory region 220328	1130 bp distal
Rr220329	regulatory region 220329	within coordinates