rs6239438 SNP Detail

Summary

• ID
  rs6239438
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148491790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCGGGGCA CAGCAGGGAA
  GGGTGACACC ATCCGTCCTC GAATCTATTG TCAGCATCAC CCGGGAGGCA GTGGATGACA
  CAGCAGTTTT GATATGGAAA AACTAACCTC ACAAGAAATC AAAGAGCTAA CTCTGCCGCG
  AAGGCGTCTT TGCTGATCCC CTCTGCCTCT CTGACGCTCT TCCGCACTTC CGGGGAACTT
  M
  ATCTAAATCT CTAAGGGCCT TTCTAAGAAT GGATGATGAC ACCGCGGGCC CCTCAGCCAT
  AGCTGCTGCT AAGTTCGTAG AGCTGAGAGG GGTTTTCTGA GGCAGAGTCA GGGGGTCACT
  GGGATGAAGA AAATTATTAG AGAATTAGGT TATGGCAATG GTCACGGCTA GGTATGGCGT
  GGGAAGCCCG CAATCCCGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8645182	WI_WGS_5_147510036	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6239438					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148491790 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	1119 bp upstream
Cpgi17076	CpG island 17076	1833 bp distal
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	1055 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr378793	regulatory region 378793	1408 bp upstream
Rr625195	regulatory region 625195	1701 bp distal
Rr625197	regulatory region 625197	1129 bp distal
Rr625198	regulatory region 625198	825 bp distal
Rr625199	regulatory region 625199	within coordinates
Rr625200	regulatory region 625200	1554 bp proximal
Tssr54578	transcription start site region 54578	1099 bp upstream
Tssr54579	transcription start site region 54579	955 bp upstream