rs6239714 SNP Detail

Summary

• ID
  rs6239714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:29069722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGAAGA TGCGGGTCTT
  GGTCCCTTCT CACACCCTTT GAACACCCAG CTTCCAGTCC GCGCTCTCAC GCCCGGGGAA
  ATCTCCAAAC TCATTGTTTC CGGGAGATGC ACCTCTTTGT TTGCACTTTC CCTGCCAATC
  AGGGAGAGGA GCGGTTCACT TTGGCAATGA GTTTCTGCCA TTTCTCAGCA TCCCAAGAGA
  Y
  GTAATATGAA GGAGCCAGTC AACCCTTTAA GGTAAGAGGT ACAATCATAG GTAGGGCTCA
  CAGATGCCTC TCCATCCATG ACCCTCCATC CTATGTACCC TCTTCCAACC AACAGCCTGG
  AAGAATTCAA AGAAGTTCTA AGTGATGGAA AAGTCTCTTC TCCCTCCCTC ATCAGTGCCC
  ACACAGGACC CTAGGGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss8645461	WI_WGS_13_28349042	WI	MOUSE	f	SNP			T		C
ss49093435	NES12402150	PERLEGEN	MM_PANEL2	f	SNP	T	T		C		T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs6239714					SNP	T	T	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49093435	NES12402150	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:29069722 () rs orientation: forward

Symbol	Name	Function Class
2610307P16Rik	RIKEN cDNA 2610307P16 gene	317 bp upstream
Cpgi5395	CpG island 5395	1299 bp distal
Cpgi5396	CpG island 5396	410 bp distal
Gm53780	predicted gene, 53780	1329 bp downstream
Rr281171	regulatory region 281171	within coordinates
Tssr121893	transcription start site region 121893	1495 bp upstream
Tssr121894	transcription start site region 121894	1433 bp upstream
Tssr121895	transcription start site region 121895	1048 bp upstream
Tssr121896	transcription start site region 121896	419 bp upstream
Tssr121897	transcription start site region 121897	357 bp upstream
Tssr121898	transcription start site region 121898	106 bp upstream