rs6239805 SNP Detail

Summary

• ID
  rs6239805
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75580971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGCACCC CAAGAAAAAG
  TGAGTCTCAT GACTACACGT TCCTGACTCA TTCATCTTGT GAGAATCAGG AAGCAGCCAG
  TCCCCAATGG ATAAACCAGT CAGCTCCTGT ATTCAGGAGG TGAGAAAAAT CCAAGCACTC
  AGTTCAGTGA CATCCACACA CTCTATTCAA GCAAGCATCA AGGGGAACAA GGGAGGCACC
  R
  GTGGGGAGGG TGGGAATAGG CTGAAAAGCG CTGCTGAGAG AAAGAAGAGC AGTTTGCAGT
  TACATCAGAG AAACCACAAA GTGTCCAGTA CCTGGACGGC AGGAACTTTA CTAGCAGTCC
  CTGGAAATCC ACTTTCTCTT CTTTTTTGCA CTTGGTGTTT CGGACCCGGG CAGACCTCCG
  CTTTGCTGTC TCTCCACTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8645552	WI_WGS_10_76177901	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6239805					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75580971 () rs orientation: forward

Symbol	Name	Function Class
Cabin1	calcineurin binding protein 1	within coordinates
D10Jhu70	DNA segment, Chr 10, Johns Hopkins University 70	1631 bp distal
Rr216328	regulatory region 216328	571 bp distal
Rr220328	regulatory region 220328	1171 bp distal
Rr220329	regulatory region 220329	within coordinates