rs6239911 SNP Detail

Summary

• ID
  rs6239911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86588930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACGTTAATGA
  CCTGTAGGGA CTTCTGGTTT ACTGCTCTAT GGATGTAAAC AATTCATCCA TGggatgtgg
  cggctctggt ctgtaatccc cagccagcac tagggaaatt gcggcaggag gattgttgtg
  agttctaggc cagAAAAAAT ACCGTTCTCA AAGAGAGACA ACTTATCAAA AGCTTCTAAT
  TAAAAGGTTG ATCTGAATTT CCACAAGCAA AGCTTGAGCC TCTCTTCTGT GTTTTCTTTA
  R
  TAAAACAATT CCAAATTGCT CCTTAGTGAT ATCAGCCAAC AACTAAGGAA GATGGCCAAC
  TTTATCGTGA CTTATGCAAT ATTTTTAAGT GGTCTGAATC ATTTTTTAAT CCTTGTCGAG
  AGGGCAGGGA CGTGAACTGG GTTATTTGAT CTTGAAAGTT GTACAGCCAT CTGGAGTCAT
  AAGGGTTCAG GGAATTTCTT TCCTGGAAAA AGATACAGGT GCAGGCCTTC TAGTTCCTTG
  CAAGGGAAAC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8645658	WI_WGS_4_83989163	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6239911					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86588930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	519 bp distal
Plin2	perilipin 2	633 bp upstream
Rr376780	regulatory region 376780	679 bp upstream
Rr594783	regulatory region 594783	1773 bp distal
Rr594784	regulatory region 594784	644 bp distal
Rr594785	regulatory region 594785	143 bp distal
Rr594786	regulatory region 594786	272 bp proximal
Rr594787	regulatory region 594787	1128 bp proximal
Rr594788	regulatory region 594788	1884 bp proximal
Tssr1221	transcription start site region 1221	440 bp downstream
Tssr37738	transcription start site region 37738	489 bp downstream
Tssr42336	transcription start site region 42336	1950 bp upstream
Tssr42337	transcription start site region 42337	1232 bp upstream
Tssr42338	transcription start site region 42338	1208 bp upstream
Tssr42339	transcription start site region 42339	1186 bp upstream
Tssr42340	transcription start site region 42340	668 bp upstream
Tssr42341	transcription start site region 42341	650 bp upstream
Tssr42342	transcription start site region 42342	1706 bp downstream
Tssr42343	transcription start site region 42343	1865 bp downstream