rs6240255 SNP Detail

Summary

• ID
  rs6240255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:65022013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAATTCAA CTATATGACC AATTTAAACC TAATTCTAAC
  TTGGAAATAT CCATACATGA AATGTAAACA TCAATTAAGG TTTCAAAGTC AAGTATTTTG
  Y
  AACTCTAAGC CAGCTGAACC AGAAAAGAGC ATCGTGCAAA CCAAACCCTG TTTCTCGGCA
  TGTAGGAAAA CAGTTAAAGT CAGTTTTGTT TTTTGTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8646002	WI_WGS_7_54779018	WI	MOUSE	f	SNP			T	C
ss46064070	mCV23737706	ABI	CRAMUS_MOUSE	f	SNP	C	T	T		C
ss144901089	ENSMUSSNP5132154	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6240255					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:65022013 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19209	CpG island 19209	671 bp distal
Gm57226	predicted gene, 57226	within coordinates
Rr647945	regulatory region 647945	1261 bp distal
Rr647946	regulatory region 647946	952 bp distal
Rr647947	regulatory region 647947	326 bp distal
Rr647948	regulatory region 647948	1109 bp proximal
Tjp1	tight junction protein 1	Intron
Tssr67032	transcription start site region 67032	832 bp downstream
Tssr72804	transcription start site region 72804	1381 bp upstream
Tssr72805	transcription start site region 72805	1365 bp upstream
Tssr72806	transcription start site region 72806	1317 bp upstream
Tssr72807	transcription start site region 72807	978 bp upstream