rs6240558 SNP Detail

Summary

• ID
  rs6240558
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50799892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACTGAG CTGCTTTCTG
  TAGGTGAGGT TTCTGGAGAA GAGTCCAGAG AGTTCCCTGC ACACCCAAGG ACTCTGATCC
  TACAATGGAC AGCATGGGGA GGAAAGGAAA GGGCCGCTCC CAGGAGGGAA GCCTCGTCTG
  TTAGCACTGG CCACAGGAGG GCTAGAGGCT TTGGAAATGT GCTTCCTGCT GGCCTGCAGC
  K
  TTCCGAGCTG CTCAGGCAGA GGCCACAGGG TAGTGCTCTG CCCTCTGTGG CCAATTCTTT
  ACTGTTCTTC ATAGGGTTTT GTACTTGGTA TGGAAGTGAA GGGTGTCCTT AGACTCGGGG
  AGGCCTGGGT GGTTACCTAT GACAACTTTA CAATGATGGA GTGATTTCAA TGGGCAAGGG
  TAAAGTTTGC TAAGCAAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8646305	WI_WGS_9_51225374	WI	MOUSE	f	SNP	T							G
ss46403935	mCV25210030	ABI	CRAMUS_MOUSE	f	SNP		T	G					G		G
ss47709500	NES11314181	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		T	G	G	G	T	G	G	G	G
ss136483622	ENSMUSSNP4548859	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6240558					SNP	T	T	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47709500	NES11314181	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50799892 () rs orientation: forward

Symbol	Name	Function Class
Gm25558	predicted gene, 25558	537 bp downstream
Ppp2r1b	protein phosphatase 2, regulatory subunit A, beta	within coordinates
Rr195477	regulatory region 195477	within coordinates
Rr209487	regulatory region 209487	within coordinates