rs6240589 SNP Detail

Summary

• ID
  rs6240589
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131403762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCTGCACT CAGTAGCAGG TCAGCCACTG CTAGGTTCAC
  GATGAAATAG TTGGTGACCG TCTGCAAGTG GCGGTTGCAG GCCACGGAGA GGATGACGAG
  M
  AGGTTGCCCG CCACAGCGGT GAGGATGAAG GCGGCTAGGA AGACACCCAC TCCCACGCCC
  TGAGCACTCA CCACTAGCCC CCCGACGGCC GCCGAGCCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss8646337	WI_WGS_2_132561979	WI	MOUSE	f	SNP									A									C
ss16374161	02.133.215	TWGNF	TWGNF-Mouse-2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	C	C	A	A	C	A	A	A	A	A	C	C	C	A	A	A	A	A	C	C	A	A	C	A	A	C	A	A	A	A
ss45240690	mCV22780877	ABI	CRAMUS_MOUSE	f	SNP			A						A											C
ss147607901	ENSMUSSNP1035591	ENSEMBL	ENSEMBL_Sanger	f	SNP			A																	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs6240589					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	C	C	A	A	C	A	A	A	A	A	C	C	C	A	A	A	A	A	C	C	A	A	C	A	A	C	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131403762 () rs orientation: forward

Symbol	Name	Function Class
Adra1d	adrenergic receptor, alpha 1d	within coordinates
Cpgi12295	CpG island 12295	within coordinates
Gm14285	predicted gene 14285	within coordinates
Rr55657	regulatory region 55657	within coordinates
Tssr20277	transcription start site region 20277	223 bp downstream
Tssr20278	transcription start site region 20278	191 bp downstream
Tssr26401	transcription start site region 26401	646 bp downstream
Tssr26402	transcription start site region 26402	673 bp downstream
Tssr26403	transcription start site region 26403	913 bp downstream