rs6240596 SNP Detail

Summary

• ID
  rs6240596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129324746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGACCAGG CTAATCTCAA
  ACTCACAAAA ATCCACATGC TTCTGACTCC AGAGTGTATT AGGATTAAGG ACATACCCAC
  CCCCCAATTA AGGACATACC CCACCCTTTT AAGACTTGGG GGGCAGGGGA AGCAAGGATG
  TCACTGTGAA ATTCAGACTC ACCTCAAATT TCTGGCAATT TTACTAGCAC CAGTCTTCCC
  R
  CCTCAGCCTC CAGTGTCTTC CTGAGATGAT CTGACTGCAT GAAATGCCCT CGCCTCATTT
  TAGTTGGCTG GTAGGTGAGG AAATGAACAT CTTAGAGGGT ATTTTCTCTC TGGTCCTAAT
  GTACATCTTT AAACTAATAG GTTCTTAGCT GGGCTGTGGT GGCCCGAACC TTAGTCCCAG
  AACTTGTGAG TGAGGCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8646344	WI_WGS_3_130031019	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6240596					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129324746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13814	CpG island 13814	908 bp proximal
Elovl6	ELOVL fatty acid elongase 6	1289 bp upstream
Gm35986	predicted gene, 35986	within coordinates
Rr375731	regulatory region 375731	831 bp downstream
Rr585018	regulatory region 585018	596 bp proximal
Rr585019	regulatory region 585019	1065 bp proximal
Rr585020	regulatory region 585020	1208 bp proximal
Rr585021	regulatory region 585021	1228 bp proximal
Rr585022	regulatory region 585022	1300 bp proximal
Tssr31642	transcription start site region 31642	1300 bp upstream
Tssr31643	transcription start site region 31643	1356 bp upstream
Tssr31644	transcription start site region 31644	1539 bp upstream
Tssr35616	transcription start site region 35616	899 bp downstream