rs6240621 SNP Detail

Summary

• ID
  rs6240621
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129324759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCAAACT CACAAAAATC
  CACATGCTTC TGACTCCAGA GTGTATTAGG ATTAAGGACA TACCCACCCC CCAATTAAGG
  ACATACCCCA CCCTTTTAAG ACTTGGGGGG CAGGGGAAGC AAGGATGTCA CTGTGAAATT
  CAGACTCACC TCAAATTTCT GGCAATTTTA CTAGCACCAG TCTTCCCGCC TCAGCCTCCA
  R
  TGTCTTCCTG AGATGATCTG ACTGCATGAA ATGCCCTCGC CTCATTTTAG TTGGCTGGTA
  GGTGAGGAAA TGAACATCTT AGAGGGTATT TTCTCTCTGG TCCTAATGTA CATCTTTAAA
  CTAATAGGTT CTTAGCTGGG CTGTGGTGGC CCGAACCTTA GTCCCAGAAC TTGTGAGTGA
  GGCAGAGGCA GGCAGATCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8646369	WI_WGS_3_130031032	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6240621					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129324759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13814	CpG island 13814	895 bp proximal
Elovl6	ELOVL fatty acid elongase 6	1276 bp upstream
Gm35986	predicted gene, 35986	within coordinates
Rr375731	regulatory region 375731	844 bp downstream
Rr585018	regulatory region 585018	583 bp proximal
Rr585019	regulatory region 585019	1052 bp proximal
Rr585020	regulatory region 585020	1195 bp proximal
Rr585021	regulatory region 585021	1215 bp proximal
Rr585022	regulatory region 585022	1287 bp proximal
Tssr31642	transcription start site region 31642	1287 bp upstream
Tssr31643	transcription start site region 31643	1343 bp upstream
Tssr31644	transcription start site region 31644	1526 bp upstream
Tssr35616	transcription start site region 35616	886 bp downstream