rs6240755 SNP Detail

Summary

• ID
  rs6240755
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:183831361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTTACAA GGAAAACAAG
  AACACATGTG GCACAGCACC CAGGATCTCA CATGACTTGT AAACTAGTAA CCCCAGTTCT
  GCAGAAAGTT AGGGGTCCCC ACAGTAGCTT CTTGTGGATT CTGTACAGGC TGTAGATGAG
  TTAAAAGAGT TTCACCCATG CTCCCTAGAA CAATTACAGC CCAGTGTCCT AAAAGGGATT
  Y
  TTATACCCAT CGGCAAAAGT TAGAAGTAAT AAAGCCATCG TGAAGAAAAA TATAAAGTTG
  CTTGTGTCCC TGGAGGGACA TTGACTTGAA TCATAGCCAG CATTGAATTA GTTCCTGGGT
  TTCTTTTACA AATCTTAGGT GTTCTTGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA ATAACTATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8646504	WI_WGS_1_185197386	WI	MOUSE	f	SNP							T		C
ss60352494	NES15853277	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6240755					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60352494	NES15853277	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:183831361 () rs orientation: forward

Symbol	Name	Function Class
Rr425178	regulatory region 425178	1318 bp proximal