rs6240909 SNP Detail

Summary

• ID
  rs6240909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30341268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         tcaaactcag
  aaatccacct gcctctgcct cctgagtact tgagactatc tcatgtatcc cagactgcct
  cagatttgat aagtacctga gaaacacctt gatgaactct tgatcatcct atgtctggcc
  actcagtgct ggaattagag acatgcacca ctgtacccag tAGGGGACAA CCAGGCTTTT
  CACTCTGCCC ACTGAGCCAC CACAGTTGAA AGCCTCGTGA TACTTTTGTG TTTAAGTTGA
  R
  TGTGNGTGAG TAGATTCCTT GAAGGAAATG GAGGTGAGTC CCCAGGGGAG GTGATGGAAC
  CATGGTGTTG CTGTAGGCAC TAGGAGTTTG GGGTTAGGTT TTAGTTTACG GTGTTAAGAA
  TTCTGGAATG AGATAAGTGG GTATCCTGGT TGGAAGTCAA TAACTAACTG TATTTGGCCC
  AAAGGTGGGA TCGGGTGAGG GAAGGAGAGA AGTAGTCTNG TCAGGTGAGT GAAGAAGTTC
  TTGGCTAGCG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8646658	WI_WGS_2_30794132	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6240909					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30341268 () rs orientation: forward

Symbol	Name	Function Class
Rr554329	regulatory region 554329	513 bp distal