rs6241475 SNP Detail

Summary

• ID
  rs6241475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46503036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCTGTTC TGCCGTGCCT
  TTCCCGCTGA CTGACTGTCC TCTCCTTCCC TTGTAGAACA CCAAGTCTGT GAAAATCCTA
  ATGGACAGGT GAGCTGAGAG CCCCCAGTCC TCCAGAACAC ATCTGAGGGA GGGCAGAGAG
  GGCCACGCCC ACTGGTGGGG AGGAAGGGCG GGCTCATGGG TGACACGCCC CCCTCACAGC
  Y
  GACGCCCCGT CCACTGCCCC CCAGGACCCA GACCTGCACG GGCAGCAGCC TTTCTCCCCC
  TAAGATCGGC CACCTGAACT CCAAGCTGTT CCTGAACGAG GTGGCCAAGA AGGAGAAGCA
  GTTGCGGAAG ATGCTAGAAG GTGAGGGGTT AAAGGCCTCT GGGCAGGGGT AACGGCCAGC
  CAGTACCAGC TCCAAGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8647226	WI_WGS_19_46436303	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6241475					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46503036 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11005	CpG island 11005	416 bp proximal
Trim8	tripartite motif-containing 8	within coordinates
Tssr156776	transcription start site region 156776	19 bp upstream
Tssr156777	transcription start site region 156777	725 bp upstream
Tssr156778	transcription start site region 156778	1117 bp upstream
Tssr156779	transcription start site region 156779	1242 bp upstream
Tssr156780	transcription start site region 156780	1556 bp upstream
Tssr156781	transcription start site region 156781	1590 bp upstream
Tssr156782	transcription start site region 156782	1656 bp upstream