rs6241715 SNP Detail

Summary

• ID
  rs6241715
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38060183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCAACT CACAGATTTT
  CAACTGCCTT TGCCTTCTGA GCTCTGGGAT TAAAGGTGTG TGCTGATTGC TTTCTCTTAG
  AATAAATATA TCTAAATATC AGGTGATTTA GATTTCTAAA AATAATAGTT TTTTCTTAGA
  CTAGAAAGAT TTTTAGTCAA ACAAAAAACA AAAAAACCCA AAAACCAGTT TTTAACCATT
  K
  AGATTTTTAT TCTCTGAATT TTGAGGAGAA ACACCATCAC AGATTTTATT TCTTCAGGGT
  TTTGAAGTAC AGTTATATTT TTGTATTTTG TTCCCATGCC CCCATATTCT TAGCATTGTT
  TTCATCATCC CCATCTCACA GAAGTAAAAT GACTTTAGCA CCTAAATGGG CTTGAGCTAG
  TCTGCTTCTT TAGAATTTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8647466	WI_WGS_1_38527397	WI	MOUSE	f	SNP							G		T
ss47238951	NES11096663	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6241715					SNP	G	G	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238951	NES11096663	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38060183 () rs orientation: forward

Symbol	Name	Function Class
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Rr16031	regulatory region 16031	783 bp distal
Tssr6342	transcription start site region 6342	1993 bp downstream
Tssr6343	transcription start site region 6343	1975 bp downstream
Tssr6344	transcription start site region 6344	1939 bp downstream
Tssr6345	transcription start site region 6345	1910 bp downstream
Tssr6346	transcription start site region 6346	1859 bp downstream
Tssr6347	transcription start site region 6347	1822 bp downstream
Tssr6348	transcription start site region 6348	1682 bp downstream
Tssr6349	transcription start site region 6349	1620 bp downstream
Tssr6350	transcription start site region 6350	565 bp upstream
Tssr6351	transcription start site region 6351	602 bp upstream
Tssr6352	transcription start site region 6352	628 bp upstream
Tssr6353	transcription start site region 6353	651 bp upstream
Tssr6354	transcription start site region 6354	1132 bp upstream
Tssr6355	transcription start site region 6355	1171 bp upstream
Tssr11327	transcription start site region 11327	1085 bp downstream