rs6241973 SNP Detail

Summary

• ID
  rs6241973
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151849666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTTGGAAA AAGAGAGAAG AAATCAAAAC
  CAGGCATTGC TGTGTCTATT CTATCATGTC GGGGGCTATT CCAGAGGCTG TCCATGCTGG
  GCAGATGGAG ACCAAGAGCA GACTCGTCTA AGACCATTCA AGGAAAGCAT CTTCAAAAGC
  M
  ACAAGGCTGG GAACAGAAGC CATCCCCACC CTCCATCTTT AACTTAGACC AGTAGGGTCT
  GCCCTATTCA GTCTATAGAT GCAAATGCTG TATTAAAGCA CATAAAGTTA CTACAGGACA
  CCAGGAACTA ATGTGCCACC CAAGGAAAAA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss8647724	WI_WGS_1_152903524	WI	MOUSE	f	SNP								C		A
ss45122145	mCV24640414	ABI	CRAMUS_MOUSE	f	SNP		C	C					C			A
ss49716715	NES13076275	PERLEGEN	MM_PANEL2	f	SNP	C		C	A	C	A	C		A		A	C	A		A	C	A		C
ss145724999	ENSMUSSNP3041012	ENSEMBL	ENSEMBL_Sanger	f	SNP			C								A
ss320061187	CHEV_1_153821045	CHEVERUD	SCREENING_POP	f	SNP														C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs6241973					SNP	C	C	C	A	C	A	C	C	A	A	A	C	A	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49716715	NES13076275	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151849666 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	Intron
Rr420390	regulatory region 420390	979 bp proximal
Rr420391	regulatory region 420391	1502 bp proximal