rs6242055 SNP Detail

Summary

• ID
  rs6242055
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50800136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGGCCA ATTCTTTACT
  GTTCTTCATA GGGTTTTGTA CTTGGTATGG AAGTGAAGGG TGTCCTTAGA CTCGGGGAGG
  CCTGGGTGGT TACCTATGAC AACTTTACAA TGATGGAGTG ATTTCAATGG GCAAGGGTAA
  AGTTTGCTAA GCAAGCACTG ACATGGGGGG GGGGGGAAGA AACTTGTACT TTTCCAAGGC
  W
  GGCAGAGCTG CGCACATGCA CAGTGAGGGT TCTGTGCCCC CAGTCCTATA CATACCACAT
  ACCCTCAGCC TCACAGCCAC TGGGCTTGCC TCCTTTTGAG AGCTGCTGCA GTTCTGGTCT
  ATATAATATT GGCCCAGGGG AATGTCCTAA GTAATGGAAA CCAAATCTCA TCTGCACTCA
  CTGCCAGCAA GCGGGATTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8647806	WI_WGS_9_51225618	WI	MOUSE	f	SNP	A							T
ss46334812	mCV25210041	ABI	CRAMUS_MOUSE	f	SNP		A	T							T
ss47709502	NES11314182	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T		A	T	T	T	A	T	T	T	T
ss136483628	ENSMUSSNP1688983	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6242055					SNP	A	A	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47709502	NES11314182	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50800136 () rs orientation: forward

Symbol	Name	Function Class
Gm25558	predicted gene, 25558	781 bp downstream
Ppp2r1b	protein phosphatase 2, regulatory subunit A, beta	within coordinates
Rr678768	regulatory region 678768	833 bp distal
Rr678769	regulatory region 678769	1743 bp proximal