rs6242078 SNP Detail

Summary

• ID
  rs6242078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50800147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTACTG TTCTTCATAG
  GGTTTTGTAC TTGGTATGGA AGTGAAGGGT GTCCTTAGAC TCGGGGAGGC CTGGGTGGTT
  ACCTATGACA ACTTTACAAT GATGGAGTGA TTTCAATGGG CAAGGGTAAA GTTTGCTAAG
  CAAGCACTGA CATGGGGGGG GGGGGAAGAA ACTTGTACTT TTCCAAGGCT GGCAGAGCTG
  Y
  GCACATGCAC AGTGAGGGTT CTGTGCCCCC AGTCCTATAC ATACCACATA CCCTCAGCCT
  CACAGCCACT GGGCTTGCCT CCTTTTGAGA GCTGCTGCAG TTCTGGTCTA TATAATATTG
  GCCCAGGGGA ATGTCCTAAG TAATGGAAAC CAAATCTCAT CTGCACTCAC TGCCAGCAAG
  CGGGATTTAG TCCTGCCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss8647829	WI_WGS_9_51225629	WI	MOUSE	f	SNP	T			C
ss46409076	mCV25210042	ABI	CRAMUS_MOUSE	f	SNP		T	C		C
ss136483631	ENSMUSSNP2175468	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs6242078					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50800147 () rs orientation: forward

Symbol	Name	Function Class
Gm25558	predicted gene, 25558	792 bp downstream
Ppp2r1b	protein phosphatase 2, regulatory subunit A, beta	within coordinates
Rr195477	regulatory region 195477	147 bp distal
Rr209487	regulatory region 209487	within coordinates