rs6242162 SNP Detail

Summary

• ID
  rs6242162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38060219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCTCTG GGATTAAAGG
  TGTGTGCTGA TTGCTTTCTC TTAGAATAAA TATATCTAAA TATCAGGTGA TTTAGATTTC
  TAAAAATAAT AGTTTTTTCT TAGACTAGAA AGATTTTTAG TCAAACAAAA AACAAAAAAA
  CCCAAAAACC AGTTTTTAAC CATTGAGATT TTTATTCTCT GAATTTTGAG GAGAAACACC
  R
  TCACAGATTT TATTTCTTCA GGGTTTTGAA GTACAGTTAT ATTTTTGTAT TTTGTTCCCA
  TGCCCCCATA TTCTTAGCAT TGTTTTCATC ATCCCCATCT CACAGAAGTA AAATGACTTT
  AGCACCTAAA TGGGCTTGAG CTAGTCTGCT TCTTTAGAAT TTCAGACCTG TGCTGTGATT
  ATCTGGCAGA TCCCTGACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8647914	WI_WGS_1_38527433	WI	MOUSE	f	SNP							A		G
ss47238954	NES11096664	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6242162					SNP	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238954	NES11096664	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38060219 () rs orientation: forward

Symbol	Name	Function Class
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Rr16031	regulatory region 16031	819 bp distal
Tssr6344	transcription start site region 6344	1975 bp downstream
Tssr6345	transcription start site region 6345	1946 bp downstream
Tssr6346	transcription start site region 6346	1895 bp downstream
Tssr6347	transcription start site region 6347	1858 bp downstream
Tssr6348	transcription start site region 6348	1718 bp downstream
Tssr6349	transcription start site region 6349	1656 bp downstream
Tssr6350	transcription start site region 6350	529 bp upstream
Tssr6351	transcription start site region 6351	566 bp upstream
Tssr6352	transcription start site region 6352	592 bp upstream
Tssr6353	transcription start site region 6353	615 bp upstream
Tssr6354	transcription start site region 6354	1096 bp upstream
Tssr6355	transcription start site region 6355	1135 bp upstream
Tssr11327	transcription start site region 11327	1049 bp downstream