rs6242643 SNP Detail

Summary

• ID
  rs6242643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46503290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCCTAA GATCGGCCAC
  CTGAACTCCA AGCTGTTCCT GAACGAGGTG GCCAAGAAGG AGAAGCAGTT GCGGAAGATG
  CTAGAAGGTG AGGGGTTAAA GGCCTCTGGG CAGGGGTAAC GGCCAGCCAG TACCAGCTCC
  AAGAGGCAGT ATAGCTTAAC CCAGGCAGGC CTGGGCTTAT ACCCTGGCTT TGCCACTTCT
  R
  GCATGGGACC TTGGGCAAGT GACATTCATT ACATGACCTT CCTGAGCTTC AGTTTTGTTT
  TGTTTTATTT TCAGTTAGAA TATAAAAATA GTAAACACCA ACCAAGATGT CACACATTTG
  GACCCACAGA GGTTCAAAGC CCACCCAAGA GAGGAAACCC GGGTTGTTTG GGTCGGGAGC
  TTCGGCAACA TTCCAAACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8648397	WI_WGS_19_46436557	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6242643					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46503290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11005	CpG island 11005	162 bp proximal
Trim8	tripartite motif-containing 8	within coordinates
Tssr156776	transcription start site region 156776	220 bp downstream
Tssr156777	transcription start site region 156777	471 bp upstream
Tssr156778	transcription start site region 156778	863 bp upstream
Tssr156779	transcription start site region 156779	988 bp upstream
Tssr156780	transcription start site region 156780	1302 bp upstream
Tssr156781	transcription start site region 156781	1336 bp upstream
Tssr156782	transcription start site region 156782	1402 bp upstream