rs6242848 SNP Detail

Summary

• ID
  rs6242848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:30915739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTTGGT TTTTCCGAGA
  CAAGGTTTCT CTGTATAGTC CTGGCTGTCC TGAAACTCAC TTTGTAGACC AGGCTGGCCT
  CGAACTCAGA AATCCACCTG CCTCTGCCTT CTGAGTGCTG GGATTAAAGG TATGCGCCAC
  CACAGGCCAA ACCCAGCAGT TTTAACTTAG GATGTGTCTT AGTCAGGGTT TTACTGCTGT
  R
  AAAAGACACC ATGACCAAGG CAAGTCTTAT AAAAAAACAT TTAATTGGGG CTGGCTTACA
  GGTTCAGAGG TTCAGTCCAT TATCATCAAG GTGGGAGCAT GGCAGCATCC AGGCTGTCAA
  GGCACAGGCA GAGCTGAGAG TTCTATGTCT TCATCAAAGG CTGCTAGTGG AAGACTGACT
  TCCAGGCAAC TGGGGTGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8648602	WI_WGS_1_31310030	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6242848					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:30915739 () rs orientation: forward

Symbol	Name	Function Class
Gm70275	predicted gene, 70275	within coordinates
Rr371054	regulatory region 371054	within coordinates
Rr408758	regulatory region 408758	1649 bp distal
Rr408759	regulatory region 408759	1526 bp distal
Tssr6136	transcription start site region 6136	1618 bp downstream
Tssr11169	transcription start site region 11169	735 bp upstream