rs6243025 SNP Detail

Summary

• ID
  rs6243025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:43350542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AAAGAACTGT
  CACGCTTCAC CTTTGGAAAT GGGCCATTAC TTCTGGTGAC AGATTATGAA TTGTGGAATA
  CAGCCGGCAC CTGGCCAGAC AAGGAAGAGT TCATAAATCA GACTCAAAAA GAAATACGTC
  ACTGGCATCC TTGAGATCTA TAGGCATTGG AGTGGGGTGT NAAAGGCATG TAAGAGGGAG
  TCAGTTCAGT CTACATGAGT ATATGTATAC TGATGTGTCG GACATGGTGT GAGGATTGTT
  R
  GTTTTTAAAA TATCTTTGTT AAGGTTCTAC AAAAGAACTA CTGNCTTTTT TTTTTTTTTT
  AAATCTACCT AAGGAGTTTT GTCTTCCCAC ATTTCTCTGA GCCTTCTACT GAAAATGAGG
  TTCTTGAACC TTGGGTTCAG CCTGCCTACA CACATGGCCT GTCCATCTCC TGATTCTGCG
  ACCAGGCTCA AGACCCATGG CTCCCTCTCA GCTTGCCCTG TTCAGTGTGT CTGACAAAAC
  TGGCCTTGTG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8648779	WI_WGS_6_43593896	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6243025					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:43350542 () rs orientation: forward

Symbol	Name	Function Class
Gm15550	predicted gene 15550	197 bp upstream
Tpk1	thiamine pyrophosphokinase	within coordinates