rs6243087 SNP Detail

Summary

• ID
  rs6243087
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:23347833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTATGC AGTTTCCAGC
  CCCCTCCTGC TGATTCACAG GGATGGACTT TTGACTGAAT GTTGCCATTC TCAATGGGAG
  ACATTGAGAA ACTGTCTCTC TCTACTATAT TTTCAATAAG GGTGAAAGAA CTCTGGGTTC
  TGCAGCATGT GGTTAAGAAA AAAGTCCCAC ACTGCAGCTT AATTGTGTGT TTATTCTTAG
  R
  AAATAATCTT GATGACTTAC AGCCTTGAGC TAAGAAAGAT CATAGCTAAT TACACCCATT
  CTTTTGAAGG GACTTTTATA TTTGCATATA TGTACTGTTT ATGAAGAGTT TGCCTGTACT
  TAGGACAGTT TAGCATATGC ATGCCTGAGG TCTGTGGAGG AGGGAGAGAT CATCAAATTC
  TGTTACTGAC TGAAGTAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8648841	WI_WGS_13_22567757	WI	MOUSE	f	SNP							G		A
ss47377074	NES11373146	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G		G		G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6243087					SNP	G	G	G	G	A	G	G	G	A	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47377074	NES11373146	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23347833 () rs orientation: forward

Symbol	Name	Function Class
Gm60433	predicted gene, 60433	within coordinates
Vmn1r219	vomeronasal 1 receptor 219	mRNA-UTR