rs6243394 SNP Detail

Summary

• ID
  rs6243394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:63405495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATCCGTTT ACTTATGTAT CCAGCGGATT CAAAGTACTG
  AAAGGAGACA TCCCGCTGAA TGGCTCCTGC CCCACTGTTC TGATTGCTCA CTTCCGCTTC
  R
  CCTGGACATC ATCCAAGTAG GGCGCCCCCA CGTGGCTCTG ATTCGCCATG TTCTTGGGGC
  ACAAGAGACA GCCAGTCAGT GACAGAATCT TGCCTCTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8649148	WI_WGS_7_53121988	WI	MOUSE	f	SNP			G	A
ss46065077	mCV25346978	ABI	CRAMUS_MOUSE	f	SNP	A	G			A
ss144828405	ENSMUSSNP585985	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6243394					SNP	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:63405495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19187	CpG island 19187	232 bp distal
Cpgi19188	CpG island 19188	1501 bp proximal
Otud7a	OTU domain containing 7A	within coordinates
Rr157437	regulatory region 157437	1695 bp distal
Rr157438	regulatory region 157438	106 bp proximal
Rr167925	regulatory region 167925	within coordinates