rs6243427 SNP Detail

Summary

• ID
  rs6243427
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:43350586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGTGACAGAT
  TATGAATTGT GGAATACAGC CGGCACCTGG CCAGACAAGG AAGAGTTCAT AAATCAGACT
  CAAAAAGAAA TACGTCACTG GCATCCTTGA GATCTATAGG CATTGGAGTG GGGTGTNAAA
  GGCATGTAAG AGGGAGTCAG TTCAGTCTAC ATGAGTATAT GTATACTGAT GTGTCGGACA
  TGGTGTGAGG ATTGTTNGTT TTTAAAATAT CTTTGTTAAG GTTCTACAAA AGAACTACTG
  M
  CTTTTTTTTT TTTTTTAAAT CTACCTAAGG AGTTTTGTCT TCCCACATTT CTCTGAGCCT
  TCTACTGAAA ATGAGGTTCT TGAACCTTGG GTTCAGCCTG CCTACACACA TGGCCTGTCC
  ATCTCCTGAT TCTGCGACCA GGCTCAAGAC CCATGGCTCC CTCTCAGCTT GCCCTGTTCA
  GTGTGTCTGA CAAAACTGGC CTTGTGGAAT TTGCCAGAAA CNTTGAATCT CTTGGNTTGA
  GTCTGGTTAC                                                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8649181	WI_WGS_6_43593940	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6243427					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:43350586 () rs orientation: forward

Symbol	Name	Function Class
Gm15550	predicted gene 15550	153 bp upstream
Tpk1	thiamine pyrophosphokinase	within coordinates