rs6243518 SNP Detail

Summary

• ID
  rs6243518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30086290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAT GAATCACCAA AGAGTGTATC
  Y
  ATTGAACACT GGAAAGAAAA TCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8649272	WI_WGS_3_29845007	WI	MOUSE	f	SNP								T		C
ss49571533	NES12883093	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	C		C		T	T	T	C	T	T	C	C
ss60382600	NES15886940	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	C		C		T	T	T	C	T	T	C	C
ss134728369	ENSMUSSNP2413599	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6243518					SNP	T	T	C	T	T	T	C	T	C	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49571533	NES12883093	PERLEGEN	MM_PANEL	f	SNP	C/T
ss60382600	NES15886940	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30086290 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574710	regulatory region 574710			1637 bp distal
Rr574711	regulatory region 574711			1432 bp distal
Rr574712	regulatory region 574712			1226 bp distal
Rr574713	regulatory region 574713			1021 bp distal
Rr574714	regulatory region 574714			816 bp distal