rs6243554 SNP Detail

Summary

• ID
  rs6243554
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30086316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         aactgaactt
  gggtcctctg cacaaataac aggcattgtt aaatgctgag acacccctct agcaccAGAA
  AAAGGTTTTG ATAAAGATGT AAAATGTGCA TCAGGTCAAg ggagggaaag gaagagggga
  ggggagagga aaagagagag agTAGTTACA GACAGTTGTA CATATCTAAG CAGAACACGG
  GTTTCTCAAG AAATGAATCA CCAAAGAGTG TATCNATTGA ACACTGGAAA GAAAATCAGC
  W
  CTTTTCTGAT TCTTTTCCAC CTCCAGGGtt gttttgtttt gcttttgttt ttgttttgtt
  ttgttGTTTT TCTGATTTTT TTTTTTTGGT ATGATTCAGA AAATANTATT GGCACAGGAT
  ATCNNTCCCT ATGTATACCT AGATGTATAC CTAGATGTAA TTACAACAGT TTGTTTTNGN
  AAATTTCCTG CCTCCTTTGG CCTGTAACAA GAAAGAAANG GACTGAATGT GTTAAGCTGT
  CACAAAGGTA                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8649308	WI_WGS_3_29845033	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6243554					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30086316 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574710	regulatory region 574710			1663 bp distal
Rr574711	regulatory region 574711			1458 bp distal
Rr574712	regulatory region 574712			1252 bp distal
Rr574713	regulatory region 574713			1047 bp distal
Rr574714	regulatory region 574714			842 bp distal