rs6243595 SNP Detail

Summary

• ID
  rs6243595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151850000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAACTGGT CACAGAGACT TCCCAATGTG
  TCACTGATGA TCCCTGTCCC CTTCTCCAAG ACTGGCTCAA CATTTCCTTC TGCTCAAAAT
  CTTTCCAGTC ACCAGCTGAT GACAAGCTGG CCTTGTGAAA GGCCCTGCTA CAACACTGGC
  Y
  CACAATGACT CTCCTAGGAT CCCAAGTGAA GGCCCACCAT TCTATGCTAG GACCCCACCC
  CCACCCCATC TTCCTGAGGC CTTACTAAGA GACTCCCCTT ACTTCTACTT GCACTGTGCA
  CGTCGGTGTC CCCTTGGGTT TCCAGAGAGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8649349	WI_WGS_1_152903858	WI	MOUSE	f	SNP							C		T
ss49716712	NES13076279	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C		T		C	C	T		T	C	T	T		C
ss320061188	CHEV_1_153821379	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6243595					SNP	C	C	T	C	T	C	C	T	T	C	C	T	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49716712	NES13076279	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151850000 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	Intron
Rr420390	regulatory region 420390	645 bp proximal
Rr420391	regulatory region 420391	1168 bp proximal