rs6243671 SNP Detail

Summary

• ID
  rs6243671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46503474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTTGCC ACTTCTGGCA
  TGGGACCTTG GGCAAGTGAC ATTCATTACA TGACCTTCCT GAGCTTCAGT TTTGTTTTGT
  TTTATTTTCA GTTAGAATAT AAAAATAGTA AACACCAACC AAGATGTCAC ACATTTGGAC
  CCACAGAGGT TCAAAGCCCA CCCAAGAGAG GAAACCCGGG TTGTTTGGGT CGGGAGCTTC
  R
  GCAACATTCC AAACTCTCCA CAGGTCCCTT CAGCACACCG GTGCCCTTCC TACAGAGCGT
  ACCCCTGTAC CCTTGTGGTG TGAACAGCTC TGGGGCCGAA AAGCGCAAGC ACTCGACAGC
  CTTCCCTGAG GCTAGCTTCC TGGAGACTTC GTCAGGCCCA GTGGGCGGCC AGTACGGGGC
  AGCGGGCACA GCCAGCAGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	CZECHII/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss8649425	WI_WGS_19_46436741	WI	MOUSE	f	SNP			G	A
ss60312534	NES15816117	PERLEGEN	MM_PANEL2	f	SNP	G	G			G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	CZECHII/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs6243671					SNP	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312534	NES15816117	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46503474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11005	CpG island 11005	within coordinates
Trim8	tripartite motif-containing 8	within coordinates
Tssr156776	transcription start site region 156776	404 bp downstream
Tssr156777	transcription start site region 156777	287 bp upstream
Tssr156778	transcription start site region 156778	679 bp upstream
Tssr156779	transcription start site region 156779	804 bp upstream
Tssr156780	transcription start site region 156780	1118 bp upstream
Tssr156781	transcription start site region 156781	1152 bp upstream
Tssr156782	transcription start site region 156782	1218 bp upstream