rs6243820 SNP Detail

Summary

• ID
  rs6243820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99853024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGACTGGG ATCTCAGCTG
  AGAGTTTAAT GACCATACCC AGCTCCCTCG ATCTTGGGAG GGTCTCACTT CAGGATGATG
  ACATCCTGGA GGGTAGCATC CCACAACAGC CCTCAGTTCT CACGGATTCC ACATTTTCCC
  CTTCTCCCAA CTGTGGCCTG AACAATCTCA TCAAAAGACT GTGCCCATGT TAGACACGGA
  Y
  CAATCTTCTT GCTACCATTT CCTACACAAC AGCATGCAGC AACAGTTCAT AGAGCACCGA
  CCTCTTATTA GGTTTGTAAG GAACCTAGTG ATTTAAAGTA CACAAGAGAT GTGCTTAGAT
  TGTGGGCGAA CCCTGCCTTG CTTGATGGAA GGAACTTGAG CATGGGTGGA TGTTGCTATC
  CACAGAAGGC CCTCACGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8649575	WI_WGS_6_100710637	WI	MOUSE	f	SNP						T		C
ss48030395	NES11885911	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		C		T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6243820					SNP	T	T	T	T	T	T	C	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48030395	NES11885911	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99853024 () rs orientation: forward

Symbol	Name	Function Class
Gm44442	predicted gene, 44442	within coordinates
Tpt1-ps3	tumor protein, translationally-controlled, pseudogene 3	1753 bp downstream
Tssr57987	transcription start site region 57987	1544 bp upstream
Tssr57988	transcription start site region 57988	1897 bp upstream