rs6243854 SNP Detail

Summary

• ID
  rs6243854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99853043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGTTTAA TGACCATACC
  CAGCTCCCTC GATCTTGGGA GGGTCTCACT TCAGGATGAT GACATCCTGG AGGGTAGCAT
  CCCACAACAG CCCTCAGTTC TCACGGATTC CACATTTTCC CCTTCTCCCA ACTGTGGCCT
  GAACAATCTC ATCAAAAGAC TGTGCCCATG TTAGACACGG ATCAATCTTC TTGCTACCAT
  Y
  TCCTACACAA CAGCATGCAG CAACAGTTCA TAGAGCACCG ACCTCTTATT AGGTTTGTAA
  GGAACCTAGT GATTTAAAGT ACACAAGAGA TGTGCTTAGA TTGTGGGCGA ACCCTGCCTT
  GCTTGATGGA AGGAACTTGA GCATGGGTGG ATGTTGCTAT CCACAGAAGG CCCTCACGCC
  CTTTGCATAC GGTAACAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8649609	WI_WGS_6_100710656	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6243854					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99853043 () rs orientation: forward

Symbol	Name	Function Class
Gm44442	predicted gene, 44442	within coordinates
Tpt1-ps3	tumor protein, translationally-controlled, pseudogene 3	1734 bp downstream
Tssr57987	transcription start site region 57987	1525 bp upstream
Tssr57988	transcription start site region 57988	1878 bp upstream