rs6244763 SNP Detail

Summary

• ID
  rs6244763
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30086535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTATCNATTG
  AACACTGGAA AGAAAATCAG CNCTTTTCTG ATTCTTTTCC ACCTCCAGGG ttgttttgtt
  ttgcttttgt ttttgttttg ttttgttGTT TTTCTGATTT TTTTTTTTTG GTATGATTCA
  GAAAATANTA TTGGCACAGG ATATCNNTCC CTATGTATAC CTAGATGTAT ACCTAGATGT
  AATTACAACA GTTTGTTTTN GNAAATTTCC TGCCTCCTTT GGCCTGTAAC AAGAAAGAAA
  S
  GGACTGAATG TGTTAAGCTG TCACAAAGGT AAAAAGATCG TTTTCCTGGA GTTCTGAAGA
  CTGCAAGCNT CCTCTCTGGA AGGCTGGAAA CCTTGGGCTC GTGGCAAATC AGCCTCTTGC
  CCAGTCCTGC TAGGCTGTAT CCTTCTCCTG ACAGAGCCCT CCCAGCCTGC TTCTACTTAG
  GTAGTTTTGA GAGAATTGGG TTTTGAGCCT CCTTCTTGCT ACCTCTAAAA CTGAGTTAAT
  GCACCTTCAT                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8650520	WI_WGS_3_29845252	WI	MOUSE	f	SNP							C		G
ss49571529	NES12883097	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	G	C	C	C	C
ss60382596	NES15886944	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6244763					SNP	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49571529	NES12883097	PERLEGEN	MM_PANEL	f	SNP	C/G
ss60382596	NES15886944	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30086535 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574710	regulatory region 574710			1882 bp distal
Rr574711	regulatory region 574711			1677 bp distal
Rr574712	regulatory region 574712			1471 bp distal
Rr574713	regulatory region 574713			1266 bp distal
Rr574714	regulatory region 574714			1061 bp distal