rs6245282 SNP Detail

Summary

• ID
  rs6245282
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30086604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATGATTC AGAAAATAAT
  ATTGGCACAG GATATCCCTC CCTATGTATA CCTAGATGTA TACCTAGATG TAATTACAAC
  AGTTTGTTTT AGCAAATTTC CTGCCTCCTT TGGCCTGTAA CAAGAAAGAA ACGGACTGAA
  TGTGTTAAGC TGTCACAAAG GTAAAAAGAT CGTTTTCCTG GAGTTCTGAA GACTGCAAGC
  R
  TCCTCTCTGG AAGGCTGGAA ACCTTGGGCT CGTGGCAAAT CAGCCTCTTG CCCAGTCCTG
  CTAGGCTGTA TCCTTCTCCT GACAGAGCCC TCCCAGCCTG CTTCTACTTA GGTAGTTTTG
  AGAGAATTGG GTTTTGAGCC TCCTTCTTGC TACCTCTAAA ACTGAGTTAA TGCACCTTCA
  TCACAGGAGG CTCCTAGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8651041	WI_WGS_3_29845321	WI	MOUSE	f	SNP								A		G
ss49571528	NES12883098	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	G		A		A	A	A	G	A	A	G	G
ss60382595	NES15886945	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	G		A		A	A	A	G	A	A	G	G
ss134728384	ENSMUSSNP2411005	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6245282					SNP	A	A	G	A	A	A	G	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49571528	NES12883098	PERLEGEN	MM_PANEL	f	SNP	A/G
ss60382595	NES15886945	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30086604 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574710	regulatory region 574710			1951 bp distal
Rr574711	regulatory region 574711			1746 bp distal
Rr574712	regulatory region 574712			1540 bp distal
Rr574713	regulatory region 574713			1335 bp distal
Rr574714	regulatory region 574714			1130 bp distal