rs6245283 SNP Detail

Summary

• ID
  rs6245283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:38705361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTTTAGT GAGCCCTGAG
  TAGCAATTGA TAAAAGCATC ACTTTTTGGG CTAAACAGAG GTGATAGGCA ATAAGGACAG
  CAGCTAGCAG CCAGGTCATG TCCCAAATCT GTCGCTGCAG GGTTAGGGCT TCTTGGACCT
  CATCAGGACC TCATTTATAG CCCCTCTGTA AAAGCATTAT CTACAGGGCC ATCTCATGGG
  R
  TTGCTATGAG GTCAAAAAAA GTCGCATGTG TAAAGTCTCA GGCTAGTCCT TGGGATGCAG
  TCAGTCCTTG TTATAAGTGG ACCATGAACT AAGGTTCTGC ACATCAGAGG CTCCCACTAC
  ATGCAAACAT GGGCCAATGT CTACAGCAGT GGTTCTCAAC CTTCCTAACA CTGTGACCAC
  TTAACACAGT TCCTCATGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8651042	WI_WGS_5_37449033	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6245283					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38705361 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22249	predicted gene, 22249			1425 bp downstream
Rr610560	regulatory region 610560			210 bp distal
Rr610561	regulatory region 610561			1221 bp proximal
Tssr46062	transcription start site region 46062			1558 bp downstream
Tssr50811	transcription start site region 50811			1546 bp upstream
Wdr1	WD repeat domain 1			Intron
				Noncoding-Transcript-Variant