rs6245809 SNP Detail

Summary

• ID
  rs6245809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56490548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGTCAC TAGGGACACC
  GCTGTCCCAG AAGCCAAGCT GGGGCGGGCA GAGGCTAGGC TGACTGCTGG CTCGCTGAAA
  GGAGAGGTGA TGGACTCGTG TAAGGCTTGG GGGGTGCTCC CGCTCTAGTC CGGGTTCAGT
  GAGTAACCCA CGTGCGACCT GTATAGCCAG TCCCCTAGAT CCGCTGCTCT TATCAACCAG
  Y
  ATTCCCTTTT CTACAATGAG ATGGGCAAGG GGAAGTCGCC TTGCAGGTAG GGAGTGACTG
  ACAGAAGACA GACGAGGCAG CCAGGTCCCT TCTTCAGGTA ACCCTGCCTC TGCCACTCCA
  CCCGGTCTCC AGGACCACCT GATCGGAAGT CCATAGGCAT CGATTCCCGG GCAGGAGGCT
  TAGCACGTAC CCCGGGTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8651570	WI_WGS_17_55242822	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6245809					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56490548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9348	CpG island 9348	within coordinates
Gm64852	predicted gene, 64852	within coordinates
Mydgf	myeloid derived growth factor	within coordinates
Rr340027	regulatory region 340027	within coordinates
Rr405371	regulatory region 405371	342 bp upstream
Tssr148771	transcription start site region 148771	339 bp downstream