rs6245909 SNP Detail

Summary

• ID
  rs6245909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:38705480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AATAAGGACA
  GCAGCTAGCA GCCAGGTCAT GTCCCAAATC TGTCGCTGCA GGGTTANGGC TTCTTGGacc
  tcatcaggac ctcatttata gcccntctgt aaaagcatta tctacagggc catctcatgg
  gnttgctatg aggtcaaaaa aagtcgcatg tgtaaagtct caggctagtc cttgggatgc
  agtcagtcct tgttataagt gGACCATGAA CTAAGGTTCT GCACATCAGA GGCTCCCACT
  R
  CATGCAAACA TGGGCCAATG TCTACAGcag nggttctcaa ccttcctaac actgtgacca
  cttaacacag ttcctcatgg tgtggtgacc cccagccata aaatgatttt gttgctactt
  catagctatt taattttgct antgttgtga ntggaaangt aaatatctgt gttttctagt
  ggtctcaggt gagccctCGG TTGAGAACNG CTGGTCTAGA AGCAGGAGAT TGACCAGACT
  TGGCGCGCTG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8651670	WI_WGS_5_37449152	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6245909					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38705480 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22249	predicted gene, 22249			1544 bp downstream
Rr610560	regulatory region 610560			329 bp distal
Rr610561	regulatory region 610561			1102 bp proximal
Tssr46062	transcription start site region 46062			1677 bp downstream
Tssr50811	transcription start site region 50811			1665 bp upstream
Wdr1	WD repeat domain 1			Intron
				Noncoding-Transcript-Variant